List of publications and dissemination activities in the VIVALDI project

LIST OF PUBLICATIONS AND DISSEMINATION ACTIVITIES IN THE VIVALDI PROJECT

Patent

1. Wolff A, Bang D D, T.L. Quyen, G. Mohsen, D.P. Vivek (2019) Solid phase isothermal amplification. European patent application number 17196114.7 https://backend.orbit.dtu.dk/ws/portalfiles/portal/191910959/WO2019073049A1.pdf (DTU)

2. Wolff A, Bang D.D., Andreasen S.Z., Nguyen T., Huynh V.N., Trang N.T.T., Quyen T.L., Golabi M., Anh T.N., Vinayaka A.C. (2020) VETPOD a total integrated Lab-on-a-chip system for rapid detection of pathogens. Patent No: DK PA202070211 5 April 2020; EP 20173505.7 7 May 2020 (DTU)

Journal publications

1. Nguyen, T., Zoëga Andreasen, S., Wolff, A., & Bang, D.D. (2018). From Lab on a Chip to Point of Care Devices: The Role of Open Source Microcontrollers. Micromachines, 9(8), 403. https://doi.org/10.3390/mi9080403 (DTU)
2. Nguyen, T., Ngo, T. A., Bang, D. D., & Wolff, A. (2019). Optimising the supercritical angle fluorescence structures in polymer microfluidic biochips for highly sensitive pathogen detection: a case study on Escherichia coli. Lab on a Chip, 19(22), 3825-3833. https://doi.org/10.1039/C9LC00888H (DTU)
3. Nguyen, T.; Chidambara Vinayaka, A.; Duong Bang, D.; Wolff, A. A Complete Protocol for Rapid and Low-Cost Fabrication of Polymer Microfluidic Chips Containing Three-Dimensional Microstructures Used in Point-of-Care Devices. Micromachines2019, 10, 624. https://doi.org/10.3390/mi10090624 (DTU)
4. Quyen, Than Linh, et al. "Classification of Multiple DNA Dyes Based on Inhibition Effects on Real-Time Loop-Mediated Isothermal Amplification (LAMP): Prospect for Point of Care Setting." Frontiers in microbiology 10 (2019): 2234. https://doi.org/10.3389/fmicb.2019.02234 (DTU)
5. Linh Quyen, T., Nordentoft, S., Chidambara Vinayaka, A., Ngo, T. A., Engelsmenn, P., Sun, Y., ... & Wolff, A. (2019). A sensitive, specific and simple loop mediated isothermal amplification method for rapid detection of campylobacter spp. In broiler production. Frontiers in microbiology, 10, 2443. https://doi.org/10.3389/fmicb.2019.02443 (DTU)
6. Aaydha, V., Ngo, T. A., Nguyen, T., Bang, D. D., & Wolff, A. (2020). Pathogen concentration combined solid phase PCR on supercritical angle fluorescence microlens array for multiplexed detection of invasive non-typhoidal Salmonella serovars. Analytical Chemistry. https://doi.org/10.1021/acs.analchem.9b04863 (DTU)
7. Nguyen Trieu, Dang Duong Bang, and Anders Wolff. "2019 novel coronavirus disease (COVID-19): paving the road for rapid detection and point-of-care diagnostics." Micromachines 11, no. 3 (2020): 306. https://doi.org/10.3390/mi11030306 (DTU)
8. Nguyen Trieu, Vinayaka Aaydha Chidambara, Sune Zoëga Andreasen, Mohsen Golabi, Quyen Than Linh, Dang Duong Bang, and Anders Wolff. "Point-of-Care Devices for Pathogen Detections: The Three Most Important Factors to Realize towards Commercialization." TrAC Trends in Analytical Chemistry (2020): 116004.https://doi.org/10.1016/j.trac.2020.116004 (DTU)
9. Dehghani Zahra, Trieu Nguyen, Mohsen Golabi, Morteza Hosseini, Ali H. Rezayan, Javad Mohammadnejad, Anders Wolff, and Aaydha C. Vinayaka. "Magnetic beads modified with Pt/Pd nanoparticle and aptamer as a catalytic nano-bioprobe in combination with loop mediated isothermal amplification for the on-site detection of Salmonella Typhimurium in food and fecal samples." Food Control 121: 107664.https://doi.org/10.1016/j.foodcont.2020.107664 (DTU)
10. Mohsen Golabi, Marion Flodrops, Beatrice Grasland, Aaydha C. Vinayaka, Than L. Quyen, Trieu Nguyen, Dang D. Bang and Anders Wolff. "Development of Reverse Transcription Loop-mediated Isothermal Amplification assay for Rapid and on-site detection of Avian Influenza Virus." Front. Cell. Infect. Microbiol. (2021) doi: 10.3389/fcimb.2021.652048 (DTU)
11. Quyen, T. L., Vinayaka, A. C., Golabi, M., Ngoc, H. V., Bang, D. D. & Wolff, A. “Elimination of Carryover Contamination in Real-Time Reverse Transcriptase Loop-Mediated Isothermal Amplification for Rapid Detection of the SARS-CoV-2 Virus in Point-of-Care Testing.” Frontiers in Cellular and Infection Microbiology. 12, 10 p., 856553 (2022) https://doi.org/10.3389/fcimb.2022.85655 (DTU)
12. Van Ngoc, H., Quyen, T. L., Vinayaka, A. C., Bang, D. D. & Wolff, A. “Point-of-care system for rapid real-time detection of SARS-CoV-2 virus based on commercially available Arduino platforms.” Frontiers in Bioengineering and Biotechnology. 10, 10 p., 917573 (2022) https://doi.org/10.3389/fbioe.2022.917573 (DTU)

News

1. Mogens Madsen (2018) On-farm poultry pathogen detection in validation stage. Rapid on-site pathogen detection to diagnose key zoonotic pathogens in animal production and food chains. Published in Poultry International Dec. 2018, (DTU), http://www.poultryinternational-digital.com/201812/index.php?utm_source=KnowledgeMarketing&utm_medium=email&utm_content=Poultry+International+Digital+Edition&utm_campaign=PI_1812#/38
2. Vivaldi project on Food navigator, https://www.foodnavigator.com/Article/2017/12/04/Biosensor-developed-in-EU-funded-project (DTU)
3. DTU Dynamo news, New device detects diseases in poultry (page 4-5-6), https://issuu.com/dtudk/docs/dynamo59?fr=sYzg2MTQ4NjgwMg (DTU)

Conference presentations, oral

1. Helena Höök (2018). VIVALDI: Validation of the VETPOD system for rapid diagnostics of Campylobacter. 13th EURL-Campylobacter workshop, 8-10 October 2018 (SVA)
2. The European Union-funded Vivaldi project by Mogens Madsen, DTU Bioengineering, Technical University of Denmark. Plenary presentation at the AOAC Europe – NMKL – NordVal International symposium 3 - 4 June 2019 in Oslo (DTU)
3. Madsen, M. (2019). Control of Salmonella in the EU. Invited presentation. Workshop “New tools for handling animal health and food safety: the VIVALDI project”. University of Parma, Italy, 23 January 2019. (DTU)
4. Trieu Nguyen (2018). A Point-of-Care system building from microfabrication techniques and open-source micro-controllers for rapid detection of pathogen. Technical University of Denmark, 19-Nov 2018, Division seminar – research presentation and workshop headed by Roberto Flore, manager of FoodLab. (DTU)
5. M. Flodrops, M. Cherbonnel-Pansart, A. Schmitz, FX. Briand, C. Guillou-Cloarec, E. Niqueux, N. Eterradossi, B. Grasland, Detection of avian Influenza A virus by RT-LAMP on VETPOD system 2020, 26th annual meeting of the NRL for AI/ND  of EU Member States, 24 September 2020. (ANSES)
6. Anders Wolff, Professor DTU Bioengineering. “PATHPOD – a POC system for detecting SARS-CoV2 virus and COVID-19”. The International Federation of Biomedical Laboratory Science (IFBLS) 2021, August 24th to 28th – Thursday 26th of August 2021 at 11:30 (DTU)
   
    

Conference presentations, posters

1. Ghidini S., Zanardi E., Varrà M.O., ColagiorgiA., Simon A.C., Ianieri A. (2018). VIVALDI - veterinary validation of point-of-care detection instrument. Poster presentation at Association of the Italian Hygienists Veterinarians, Milano 12-14 September 2018. http://aivi.it/index.php?idpaginaprincipale=12&idpagina=167 (PARMA)
2. Ghidini S., Zanardi E., Varrà M.O., ColagiorgiA., Simon A.C., Ianieri A (2018). VIVALDI - veterinary validation of point-of-care detection instrument. Poster presentation at Rapid Methods Conference in Amsterdam 5-7 November 2018 https://www.rapidmethods.eu/ (PARMA)
3. Ghidini S., Zanardi E., Varrà M.O., ColagiorgiA., Simon A.C., Ianieri A (2019). VIVALDI - veterinary validation of point-of-care detection instrument. Poster presentation at 73th SISVet (Italian Society of Veterinary Sciences) in Olbia, 19/22 June 2019 (https://www.sisvet.it/eventi/2019/congrsis19.aspx) (PARMA)
4. Nguyen, T., Aaydha Chidambara, V., Bang, D. D., & Wolff, A. (2019). Large-scale fabrication of microfluidic chips with three-dimensional microstructures for point of care application. In Proceedings of the 23rd International Conference on Miniaturized Systems for Chemistry and Life Sciences (pp. 1658-1659). [M237.h]

   https://backend.orbit.dtu.dk/ws/portalfiles/portal/197458430/LARGE_SCALE_FABRICATION_OF_MICROFLUIDIC_CHIPS_WITH_THREE_DIMENSIONAL_MICROSTRUCTURES_FOR_POINT_OF_CARE_APPLICATION.pdf (DTU)

5. Nguyen, T., & Wolff, A. (2019). Miniaturising supercritical angle fluorescence and total internal reflection fluorescence structures for a microfluidic system using in diagnostic applications. µTAS 2019/microtas 2019, Basel, Switzerland. https://backend.orbit.dtu.dk/ws/portalfiles/portal/198504367/PG1672.pdf (DTU)

The poster is available at https://www.dropbox.com/s/8bkrt5i7d27mmgx/VIVALDI%20Poster.pptx?dl=0

Workshops and training course

1. Organized the Workshop - “New tools for handling animal health and food safety: the VIVALDI project” An open workshop that took place in Parma, Italy, on January 23, 2019, and featured the VETPOD system. Around 80 specialists attended the course. (UNIPR, DTU, ANSES, SVA)
   • http://www.advancedstudies.unipr.it/new-tools-for-handling-animal-health-and-food-safety-the-vivaldi-project/
   • http://www.advancedstudies.unipr.it/?p=789
2. VIVALDI partners training course 27-28 May 2019 at DTU FOOD. Training of the VIVALDI partners in the use of the VETPOD system to detect pathogens 19 participants (DTU)
3. VIVALDI end-user workshop. The VIVALDI end-user workshop was held in connection with the 4^th International Conference on Animal Health Surveillance, 3-5 May 2022 Copenhagen, Denmark.